About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34888EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1
Paelopatides34889ALCOHOL DEHYDROGENASE RELATED
Paelopatides34890LIMBIN/ELLIS-VAN CREVELD PROTEIN
Paelopatides34891-
Paelopatides34892LIMBIN/ELLIS-VAN CREVELD PROTEIN
Paelopatides34893ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides34894UNCHARACTERIZED
Paelopatides34895ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
Paelopatides34896REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34897ADHESION G-PROTEIN COUPLED RECEPTOR
Paelopatides34898PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides34900GTP-BINDING
Paelopatides34901INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides34902INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides34903ORGANIC ANION TRANSPORTER
Paelopatides34904TYROSINE-PROTEIN KINASE
Paelopatides34905PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Paelopatides34906METALLOPROTEASE TLDD
Paelopatides34907SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING
Paelopatides34908UPF0565 PROTEIN C2ORF69
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