About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35331L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides35332ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides35334CELL FATE DETERMINING PROTEIN MAB21-RELATED
Paelopatides35335-
Paelopatides35336BEIGE/BEACH-RELATED
Paelopatides35337PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides35338-
Paelopatides35339BEIGE/BEACH-RELATED
Paelopatides35340REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35341-
Paelopatides35342HEAT SHOCK PROTEIN 90 FAMILY MEMBER
Paelopatides35343HEAT SHOCK PROTEIN 90 FAMILY MEMBER
Paelopatides35344V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT
Paelopatides35345WD40 REPEAT PROTEIN
Paelopatides35346WD40 REPEAT PROTEIN
Paelopatides35347RETROTRANSPOSON
Paelopatides35348-
Paelopatides35349CYCLINS
Paelopatides35350PHOSPHATIDYLINOSITOL KINASE
Paelopatides35351-
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