About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35372-
Paelopatides35373ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
Paelopatides3537426S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
Paelopatides35375EPM2A-INTERACTING PROTEIN 1
Paelopatides3537626S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
Paelopatides3537726S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
Paelopatides35378V-TYPE PROTON ATPASE SUBUNIT C
Paelopatides35379U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
Paelopatides35380RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides35381RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides35382U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
Paelopatides35383-
Paelopatides35384RFX TRANSCRIPTION FACTOR FAMILY
Paelopatides35385ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Paelopatides35386CRUMBS FAMILY MEMBER
Paelopatides35387RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides35388-
Paelopatides35389ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4
Paelopatides35390RAB GDP/GTP EXCHANGE FACTOR
Paelopatides35391NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL
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