About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35412MACROGLOBULIN / COMPLEMENT
Paelopatides35413MACROGLOBULIN / COMPLEMENT
Paelopatides35414-
Paelopatides35415MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides35416AGAP009604-PA
Paelopatides35417E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides35418MACROGLOBULIN / COMPLEMENT
Paelopatides35419-
Paelopatides35420-
Paelopatides35421-
Paelopatides35422-
Paelopatides35423-
Paelopatides35424-
Paelopatides35425REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35426TUMOR PROTEIN P53-INDUCIBLE PROTEIN 13
Paelopatides3542752 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides35428-
Paelopatides35429OLIGOPEPTIDE TRANSPORTER-RELATED
Paelopatides35430REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35431ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
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