About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36404SORTING NEXIN FAMILY MEMBER
Paelopatides36405-
Paelopatides36406MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2
Paelopatides36407ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36408-
Paelopatides36409REGULATOR OF CHROMOSOME CONDENSATION
Paelopatides36410-
Paelopatides36411PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides36412-
Paelopatides36413-
Paelopatides36414CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36415-
Paelopatides36416-
Paelopatides36417PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides36418PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides36419ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides36420REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36422FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides36423PROTEIN CBG26694
Paelopatides36424PROTEIN CBG26694
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