About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36912CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36913RETROTRANSPOSON
Paelopatides36914GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
Paelopatides36915DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides36916MAJOR VAULT PROTEIN
Paelopatides36917-
Paelopatides36918MAJOR VAULT PROTEIN
Paelopatides36919-
Paelopatides36920LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides36921ACROSIN-RELATED
Paelopatides36922PHOSPHATIDYLSERINE DECARBOXYLASE
Paelopatides36923-
Paelopatides36924BETA1,3-GALACTOSYLTRANSFERASE
Paelopatides36925HEAT SHOCK FACTOR 2-BINDING PROTEIN
Paelopatides36926PROTEIN CBG16200
Paelopatides36927PROTEIN CBG16200
Paelopatides36928TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED
Paelopatides36929-
Paelopatides36930ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides36931APOPTOSIS-INDUCING FACTOR 1
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