About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37037E3 UBIQUITIN-PROTEIN LIGASE UBR7
Paelopatides37038REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37039L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides37040GLYCOPROTEIN HORMONE RECEPTOR
Paelopatides37041CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides37042-
Paelopatides37043-
Paelopatides37044PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides37045NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC
Paelopatides37046-
Paelopatides37047-
Paelopatides37048SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides37049NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides37050NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides37051REVERSE TRANSCRIPTASES
Paelopatides37052COLORECTAL MUTANT CANCER PROTEIN MCC PROTEIN -RELATED
Paelopatides37053-
Paelopatides37054-
Paelopatides37055COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides37057PROTEIN CBG26694
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