About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37229PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides37230MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Paelopatides37231PROTEIN CBG26694
Paelopatides37232PARANEOPLASTIC ANTIGEN
Paelopatides37233PROTEIN CBG26694
Paelopatides37234ATP-BINDING TRANSPORT PROTEIN-RELATED
Paelopatides37235-
Paelopatides37236FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides37237SI:CH211-266K2.1
Paelopatides37238URIDINE KINASE
Paelopatides37239MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
Paelopatides37240-
Paelopatides37241KINESIN-LIKE PROTEIN KIF11
Paelopatides37242XAA-PRO AMINOPEPTIDASE 1
Paelopatides372435-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides37244NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides37245CENTROMERE PROTEIN E
Paelopatides37246TRANSPOSON
Paelopatides37247-
Paelopatides37250ACROSIN-RELATED
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