About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37186VHS DOMAIN CONTAINING PROTEIN FAMILY
Paelopatides37187PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
Paelopatides37188ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR
Paelopatides37189-
Paelopatides37190VACUOLAR IMPORT AND DEGRADATION PROTEIN 24
Paelopatides37191MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7
Paelopatides37192ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides37194RETROTRANSPOSON
Paelopatides37195ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides37196SPHINGOSINE KINASE
Paelopatides37197FAS-BINDING FACTOR 1
Paelopatides37198FAS-BINDING FACTOR 1
Paelopatides37199-
Paelopatides37200CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides37203UNCHARACTERIZED
Paelopatides37204UNCHARACTERIZED
Paelopatides37205PLEXUS, ISOFORM A
Paelopatides37206-
Paelopatides37207GENETIC SUPPRESSOR ELEMENT 1
Paelopatides37208ENDONUCLEASE-RELATED
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