About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37125ENDONUCLEASE-RELATED
Paelopatides37126PROTEIN CBG26694
Paelopatides37127PROTEIN CBG26694
Paelopatides37128-
Paelopatides37129YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
Paelopatides37130-
Paelopatides371315-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides37133SOLUTE CARRIER FAMILY 17
Paelopatides37134-
Paelopatides37135COILIN
Paelopatides37136HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides37137ENDONUCLEASE
Paelopatides37138-
Paelopatides37139-
Paelopatides37140-
Paelopatides37141PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides37142WD-40 REPEAT PROTEIN
Paelopatides37143STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15
Paelopatides37144LD35087P
Paelopatides37145MATRIX METALLOPROTEINASE
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