About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37341PROTEIN CBG23806
Paelopatides37342-
Paelopatides37343FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides37344PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides37345OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides37346CYTOCHROME P450 FAMILY 4
Paelopatides37347CYTOCHROME P450 FAMILY 4
Paelopatides37348CYTOCHROME P450 FAMILY 4
Paelopatides37349LD02310P
Paelopatides37350ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides37351MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S24
Paelopatides37352MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
Paelopatides37353UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN
Paelopatides37354UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN
Paelopatides37355SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Paelopatides3735660S RIBOSOMAL PROTEIN L34
Paelopatides37357PROTEIN TAG-278-RELATED
Paelopatides37358VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
Paelopatides37359ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
Paelopatides37360MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25
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