About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37467-
Paelopatides37468GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides37469UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides37470-
Paelopatides37471-
Paelopatides37472-
Paelopatides37473PCNA-ASSOCIATED FACTOR
Paelopatides37474ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides37475EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
Paelopatides37476ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides374771,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Paelopatides37478DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
Paelopatides37479UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED
Paelopatides37480-
Paelopatides37481PROTEIN CBG26694
Paelopatides37482ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37483-
Paelopatides37484-
Paelopatides37485-
Paelopatides37486-
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