About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37793ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37794-
Paelopatides37795HEDGEHOG
Paelopatides37796-
Paelopatides37797-
Paelopatides37798POL PROTEIN
Paelopatides37799-
Paelopatides37800GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides37801L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides37802PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides37803REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37804-
Paelopatides37805PROTEIN CBG26694
Paelopatides37806GTP-BINDING
Paelopatides37807GTP-BINDING
Paelopatides37808-
Paelopatides37809REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37810TESTIS-EXPRESSED PROTEIN 52
Paelopatides37811SIALIDASE
Paelopatides37812SODIUM/NUCLEOSIDE COTRANSPORTER
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