About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37813PROTEIN CBG26694
Paelopatides37814ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37815ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37816NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
Paelopatides37817DIMETHYLANILINE MONOOXYGENASE
Paelopatides37818-
Paelopatides37819RING FINGER PROTEIN 31-RELATED
Paelopatides37820ENDONUCLEASE-RELATED
Paelopatides37821-
Paelopatides37822CORTACTIN AND DREBRIN
Paelopatides37823MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
Paelopatides37824AMINO ACID TRANSPORTER
Paelopatides37825INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides37826PROTEIN CBG26694
Paelopatides37827T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL
Paelopatides37828T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL
Paelopatides37829WASH COMPLEX SUBUNIT 5
Paelopatides37830WASH COMPLEX SUBUNIT 5
Paelopatides37831WASH COMPLEX SUBUNIT 5
Paelopatides37832LD33804P
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