About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37853-
Paelopatides37854TMEM26 PROTEIN
Paelopatides37855REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37856NOTUM-RELATED
Paelopatides37857PROTEIN LIN-7 HOMOLOG
Paelopatides37858TRANSDUCER OF ERBB2 TOB
Paelopatides37859GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides37860-
Paelopatides37861LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
Paelopatides37862REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37863-
Paelopatides37864-
Paelopatides37865-
Paelopatides37866-
Paelopatides37867MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides37868PROTEIN CBG26694
Paelopatides37869PROTEIN CBG26694
Paelopatides37870IP13529P
Paelopatides37871SYNAPTIC VESICLE GLYCOPROTEIN 2
Paelopatides37872GTP-BINDING
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