About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38276-
Paelopatides38277-
Paelopatides38278SHC TRANSFORMING PROTEIN
Paelopatides38279SHC TRANSFORMING PROTEIN
Paelopatides38280VESICULAR MANNOSE-BINDING LECTIN
Paelopatides38281CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides38282ZINC FINGER AND SCAN DOMAIN-CONTAINING
Paelopatides38283-
Paelopatides38284CENTROMERE PROTEIN T
Paelopatides38285SI:CH211-108C17.2-RELATED-RELATED
Paelopatides38286LEUCINE AMINOPEPTIDASE-RELATED
Paelopatides38287TUBULIN
Paelopatides38288CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
Paelopatides38289-
Paelopatides38290TYROSINE-PROTEIN KINASE
Paelopatides38291-
Paelopatides38292UNCHARACTERIZED
Paelopatides38293UNCHARACTERIZED
Paelopatides38294UNCHARACTERIZED
Paelopatides38295-
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