About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38154DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Paelopatides38155L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides38156PROTEIN CBG26694
Paelopatides38157MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
Paelopatides38158PEPTIDASE
Paelopatides38159FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides38160PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides38161F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides38162-
Paelopatides38163PROTEIN CBG26694
Paelopatides38164PROTEIN CBG26694
Paelopatides38165-
Paelopatides38166TRANSPOSASE, PUTATIVE-RELATED
Paelopatides38167INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides38168MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7
Paelopatides38169INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG
Paelopatides38170PROTEIN CMSS1
Paelopatides38171METHYLTRANSFERASE
Paelopatides38172ARGININE/SERINE-RICH PROTEIN PNISR
Paelopatides38173UNCHARACTERIZED
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