About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38174TAXILIN
Paelopatides38175-
Paelopatides38176SMITH-MAGENIS SYNDROME REGION GENE 8 PROTEIN
Paelopatides38177PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides38178SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides38179-
Paelopatides38180CRSP70
Paelopatides38181CRSP70
Paelopatides38182PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides38183E3 UBIQUITIN-PROTEIN LIGASE KCMF1
Paelopatides38184ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38185REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38186ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides38187-
Paelopatides38188-
Paelopatides38189APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides38190SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides38191ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38192-
Paelopatides38193ADHESION G PROTEIN-COUPLED RECEPTOR G7
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