About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38254AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides382552-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED
Paelopatides38256-
Paelopatides38257FRG1 PROTEIN
Paelopatides38258CARBOHYDRATE SULFOTRANSFERASE
Paelopatides38259COILED-COIL DOMAIN-CONTAINING PROTEIN 169
Paelopatides38260-
Paelopatides38261RWD DOMAIN CONTAINING PROTEIN 2
Paelopatides38262-
Paelopatides38263-
Paelopatides38264UNCHARACTERIZED
Paelopatides38265-
Paelopatides38266UNCHARACTERIZED
Paelopatides38268SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides38269SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
Paelopatides38270-
Paelopatides38271-
Paelopatides38272REVERSE TRANSCRIPTASES
Paelopatides38273THREE PRIME REPAIR EXONUCLEASE 1, 2
Paelopatides38274-
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