About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38377NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
Paelopatides38378-
Paelopatides38379U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED
Paelopatides38380ALDO/KETO REDUCTASE
Paelopatides38381DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides38382DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
Paelopatides38383-
Paelopatides38384-
Paelopatides38385-
Paelopatides38386E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER
Paelopatides38387E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER
Paelopatides38388TRANSAMIDASE
Paelopatides38389POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides38390OTU DOMAIN CONTAINING PROTEIN
Paelopatides38391-
Paelopatides38392-
Paelopatides38393PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
Paelopatides38394CORE-BINDING FACTOR, BETA SUBUNIT
Paelopatides38395SSM4 PROTEIN
Paelopatides38396REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
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