About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38664-
Paelopatides38667-
Paelopatides38668FARNESYL-PYROPHOSPHATE SYNTHETASE
Paelopatides38669MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
Paelopatides38670N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE
Paelopatides38671ENDONUCLEASE
Paelopatides38672-
Paelopatides38673-
Paelopatides38674-
Paelopatides38675YIPPEE DOMAIN-CONTAINING PROTEIN
Paelopatides38676-
Paelopatides38677-
Paelopatides38678CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides38679-
Paelopatides38680REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38681GABA-B RECEPTOR
Paelopatides38682TUBERIN
Paelopatides38683RETROTRANSPOSON
Paelopatides38684-
Paelopatides38685ZGC:174356
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