About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38686INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED
Paelopatides38687PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides38688CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides38689-
Paelopatides38690ACTIN
Paelopatides38691REVERSE TRANSCRIPTASES
Paelopatides38692-
Paelopatides38693SERINE/THREONINE-PROTEIN KINASE RIO1
Paelopatides38694CYTOSINE DEAMINASE FAMILY MEMBER
Paelopatides38695-
Paelopatides38696-
Paelopatides38697TRANSCRIPTION FACTOR E2F
Paelopatides38698OXIDOREDUCTASE-RELATED
Paelopatides38699-
Paelopatides38700COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides38701SUSHI DOMAIN-CONTAINING PROTEIN 1
Paelopatides38702-
Paelopatides38703-
Paelopatides38704DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides38705PROTEIN CBG26694
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