About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38542E3 UBIQUITIN-PROTEIN LIGASE TRIP12
Paelopatides38543-
Paelopatides38544-
Paelopatides38545-
Paelopatides38546-
Paelopatides38547SENTRIN/SUMO-SPECIFIC PROTEASE
Paelopatides38548-
Paelopatides38549CXC2 DOMAIN-CONTAINING PROTEIN
Paelopatides38550-
Paelopatides38551-
Paelopatides38552TRANSPOSON
Paelopatides38553MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides38554B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides38555CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides38556NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides38557LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN
Paelopatides38558CONTACTIN 5
Paelopatides38559-
Paelopatides38560-
Paelopatides38561RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
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