About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38562CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides38563-
Paelopatides38564-
Paelopatides38565-
Paelopatides38566PROTEIN CBG26694
Paelopatides38567PARANEOPLASTIC ANTIGEN
Paelopatides38568-
Paelopatides38570N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides38571-
Paelopatides3857252 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides38573PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Paelopatides38574-
Paelopatides38575-
Paelopatides38576TRANSPOSON
Paelopatides38577DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides38578HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides38579REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38580-
Paelopatides38581ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides38582FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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