About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38748-
Paelopatides38749-
Paelopatides387503'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN
Paelopatides38751-
Paelopatides38752TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
Paelopatides38753PARVIN
Paelopatides38754PERIODIC TRYPTOPHAN PROTEIN 1
Paelopatides38755PERIODIC TRYPTOPHAN PROTEIN 1
Paelopatides38756ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38757ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38758SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides38759IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides38760ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38761PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides38762-
Paelopatides38763-
Paelopatides38764-
Paelopatides38765SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
Paelopatides38766EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
Paelopatides38767CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED
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