About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38768PROTEIN CBG26694
Paelopatides38769CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED
Paelopatides38770ALKALINE CERAMIDASE 3
Paelopatides38771-
Paelopatides38772PROTEIN SIDEKICK
Paelopatides38773-
Paelopatides38774PROTEIN SIDEKICK
Paelopatides38775-
Paelopatides38776EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
Paelopatides38777EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
Paelopatides38778PEPTIDOGLYCAN RECOGNITION PROTEIN
Paelopatides38779B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides38780-
Paelopatides38781OPSIN
Paelopatides38782RETROTRANSPOSON
Paelopatides38783-
Paelopatides38784FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides38785-
Paelopatides38786PERICENTRIN-LIKE PROTEIN, ISOFORM F
Paelopatides38787PERICENTRIN-LIKE PROTEIN, ISOFORM F
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