About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38788-
Paelopatides38789-
Paelopatides38790PROTEIN CBG26694
Paelopatides38791OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides38792DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides38793E3 UBIQUITIN-PROTEIN LIGASE RNF8
Paelopatides38794PARANEOPLASTIC ANTIGEN
Paelopatides38795PROTEIN CBG26694
Paelopatides38796-
Paelopatides38797RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides38798-
Paelopatides38799MYOSIN
Paelopatides38800CLATHRIN ASSEMBLY PROTEIN
Paelopatides38801SEC63 DOMAIN-CONTAINING
Paelopatides38802SEC63 DOMAIN-CONTAINING
Paelopatides38803DPY-19-LIKE 1, LIKE (H. SAPIENS)
Paelopatides38804AUTOPHAGY PROTEIN 5
Paelopatides38805ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38806INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides38807TRANSPOSABLE ELEMENT-RELATED
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