About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38828-
Paelopatides38829CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
Paelopatides38830IMMEDIATE EARLY RESPONSE GENE
Paelopatides38831-
Paelopatides38832PROTEIN CBG26694
Paelopatides38833SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B
Paelopatides38834RETROTRANSPOSON
Paelopatides38835PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides38836-
Paelopatides38837TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides38838-
Paelopatides38839E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
Paelopatides38840OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides38841-
Paelopatides38842SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides38843PROTEIN CBG26694
Paelopatides38844ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides38845-
Paelopatides38846REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38847-
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