About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38868MACROGLOBULIN / COMPLEMENT
Paelopatides38869MACROGLOBULIN / COMPLEMENT
Paelopatides38870MACROGLOBULIN / COMPLEMENT
Paelopatides38871TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides38872REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38873IRON-SULFUR PROTEIN NUBPL
Paelopatides38874-
Paelopatides38875NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2
Paelopatides38876NEUTROPHIL CYTOSOLIC FACTOR 2, NEUTROPHIL NADPH OXIDASE FACTOR 2
Paelopatides38877-
Paelopatides38878CYTOCHROME C1 HEME LYASE
Paelopatides38879SMALL INTEGRAL MEMBRANE PROTEIN 15
Paelopatides38880ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2
Paelopatides38881RNA 3' TERMINAL PHOSPHATE CYCLASE
Paelopatides38882EG:EG0003.4 PROTEIN-RELATED
Paelopatides38883T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Paelopatides38884RAB6A-GEF COMPLEX PARTNER PROTEIN 1
Paelopatides38885RAB6A-GEF COMPLEX PARTNER PROTEIN 1
Paelopatides38886-
Paelopatides38887RING FINGER PROTEIN 31-RELATED
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