About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39413REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39414REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39415ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides39416APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides39417ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides39418APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides39419APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides39420LIM/HOMEOBOX PROTEIN LHX
Paelopatides39421MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Paelopatides39422NETRIN RECEPTOR UNC5
Paelopatides39423-
Paelopatides39424PHOSPHOLIPASE A2 FAMILY MEMBER
Paelopatides39425AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides39426FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides39427REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39428BUCENTAUR RELATED
Paelopatides39429-
Paelopatides39430-
Paelopatides39431-
Paelopatides39432-
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