About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39330SMALL INTEGRAL MEMBRANE PROTEIN 13
Paelopatides39331-
Paelopatides39332BONUS, ISOFORM C-RELATED
Paelopatides39333DNAJ-LIKE-2, ISOFORM A-RELATED
Paelopatides39334POLYCYSTIN FAMILY MEMBER
Paelopatides39335TRANSMEMBRANE PROTEIN 208
Paelopatides39336ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
Paelopatides39337ATP-DEPENDENT PROTEASE
Paelopatides39338ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides39339PROTEIN CBG26694
Paelopatides39340HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides39341PROTEIN CBG26694
Paelopatides39342-
Paelopatides39343IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides39344PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides39345-
Paelopatides39346PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides39347NOP14
Paelopatides39348NOP14
Paelopatides39349-
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