About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39286PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides39287-
Paelopatides39288REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39289-
Paelopatides39290ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides39291PROTEIN CBG26694
Paelopatides39292-
Paelopatides39293-
Paelopatides39294IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C
Paelopatides39295UNCHARACTERIZED
Paelopatides39296AGAP003327-PA
Paelopatides39297AGAP003327-PA
Paelopatides39298ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides39299PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides39300RETROTRANSPOSON
Paelopatides39301E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides39302L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides39303-
Paelopatides39304PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides39305-
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