About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39433FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides39434-
Paelopatides39435NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides39436FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides39437IP13529P
Paelopatides39438SI:CH211-196P9.1-RELATED
Paelopatides39439STEROL DESATURASE
Paelopatides39440PROTEIN, PUTATIVE-RELATED
Paelopatides39441POTE ANKYRIN DOMAIN
Paelopatides39442NA+/CA2+ K+ INDEPENDENT EXCHANGER
Paelopatides39443CS DOMAIN-CONTAINING PROTEIN
Paelopatides39444INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides39445REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39446-
Paelopatides39447SERINE/THREONINE-PROTEIN KINASE
Paelopatides39448NOTCH LIGAND FAMILY MEMBER
Paelopatides39449NOTCH LIGAND FAMILY MEMBER
Paelopatides39450BITESIZE, ISOFORM I
Paelopatides39451DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
Paelopatides39452OLIGORIBONUCLEASE, MITOCHONDRIAL
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