About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39473-
Paelopatides39474XANTHINE DEHYDROGENASE
Paelopatides39475CLASP
Paelopatides39476-
Paelopatides39477DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides39478PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides39479CLASP
Paelopatides39480UPF0692 PROTEIN C19ORF54
Paelopatides39481PINN
Paelopatides39482GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides39483-
Paelopatides39484REVERSE TRANSCRIPTASE
Paelopatides39485TRANSPOSABLE ELEMENT-RELATED
Paelopatides39486ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39487ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39488GTP-BINDING
Paelopatides39489FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides39490ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39491-
Paelopatides39492FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
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