About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39618PROTEIN CBG26694
Paelopatides39619REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39620PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides39621RAS-RELATED PROTEIN RAB
Paelopatides39622SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides39623OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Paelopatides39624OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Paelopatides39625RETROTRANSPOSON
Paelopatides39626REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39627TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1
Paelopatides39628SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
Paelopatides39629TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides39630NICE-3
Paelopatides39631-
Paelopatides39632-
Paelopatides39633-
Paelopatides39634-
Paelopatides39635REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39638ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39639LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
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