About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39597-
Paelopatides39598NISCHARIN RELATED
Paelopatides39599SHIPPO-1-RELATED
Paelopatides39600CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
Paelopatides39601RETROTRANSPOSON
Paelopatides39603-
Paelopatides39604SORTING NEXIN 17 AND 27
Paelopatides39605-
Paelopatides39606ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides39607ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides39608SORTING NEXIN 17 AND 27
Paelopatides39609-
Paelopatides39610-
Paelopatides39611GAMMA TUBULIN COMPLEX PROTEIN
Paelopatides39612PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
Paelopatides39613PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides39614PHOSPHOMEVALONATE KINASE
Paelopatides39615-
Paelopatides39616-
Paelopatides39617FCH AND DOUBLE SH3 DOMAINS PROTEIN
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