About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39722GAG-RELATED PROTEIN
Paelopatides39723-
Paelopatides39724RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1
Paelopatides39725ATP SYNTHASE GAMMA CHAIN
Paelopatides39726CALCINEURIN B
Paelopatides39727-
Paelopatides39729CALCIUM-TRANSPORTING ATPASE
Paelopatides39730-
Paelopatides39731PROTEIN CBG26694
Paelopatides39732MACROGLOBULIN / COMPLEMENT
Paelopatides39733INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides39734-
Paelopatides39735ENDONUCLEASE-RELATED
Paelopatides39736-
Paelopatides39737ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides39738PROTEIN CBG26694
Paelopatides39739-
Paelopatides39740CYTOCHROME P450 508A4-RELATED
Paelopatides39741ENDONUCLEASE-RELATED
Paelopatides39742ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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