About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39907BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides39908NUCLEOPORIN
Paelopatides39909-
Paelopatides39910ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides39911-
Paelopatides39912ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides39913-
Paelopatides39914RETROTRANSPOSON
Paelopatides39915RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN
Paelopatides39916-
Paelopatides39917CELL DIVISION PROTEIN KINASE
Paelopatides39918T CELL-SPECIFIC ADAPTER PROTEIN TSAD
Paelopatides39919CARBAMOYLTRANSFERASE FAMILY MEMBER
Paelopatides39920GLYCOSYLTRANSFERASE
Paelopatides39921LEUCINE CARBOXYL METHYLTRANSFERASE
Paelopatides39922-
Paelopatides39923-
Paelopatides39924-
Paelopatides39925TANDEM PH DOMAIN CONTAINING PROTEIN
Paelopatides39926MYND-TYPE DOMAIN-CONTAINING PROTEIN
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