About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39927FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides39928DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides39929SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
Paelopatides39930REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39931EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides39932SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Paelopatides39933PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Paelopatides39934CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides39935E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides39936PROTEIN CBG26694
Paelopatides39937-
Paelopatides39938TUDOR DOMAIN CONTAINING PROTEIN
Paelopatides39939-
Paelopatides39940TRANSPOSABLE ELEMENT-RELATED
Paelopatides39941-
Paelopatides39942CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides39943GUANYLYL CYCLASE
Paelopatides39944MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
Paelopatides39945HAUS AUGMIN-LIKE COMPLEX SUBUNIT 2
Paelopatides39946-
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