About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40251FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides40252ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40253REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40254ENDONUCLEASE-RELATED
Paelopatides40255-
Paelopatides40256BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides40257LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides40258REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40259CYSTATIN FAMILY MEMBER
Paelopatides40260REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40261ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides40262-
Paelopatides40263FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides40264ENDONUCLEASE-RELATED
Paelopatides40265PHOSPHOGLYCERATE KINASE
Paelopatides40266PHOSPHOGLYCERATE KINASE
Paelopatides40267POL PROTEIN
Paelopatides40269REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40270-
Paelopatides40271-
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