About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40120PROTEIN CBG26694
Paelopatides40121-
Paelopatides40122CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides40123EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
Paelopatides40124-
Paelopatides40125-
Paelopatides40126-
Paelopatides40127EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED
Paelopatides40130ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40131DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
Paelopatides40132NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides40133-
Paelopatides40134-
Paelopatides40135REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40136SLR1189 PROTEIN
Paelopatides40137SLR1189 PROTEIN
Paelopatides40138-
Paelopatides40139UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides40140-
Paelopatides40141-
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