About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40228SEPIAPTERIN REDUCTASE
Paelopatides40229FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides40230ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides40231-
Paelopatides40232TYROSINE-PROTEIN KINASE
Paelopatides40233TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Paelopatides40234CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
Paelopatides40235-
Paelopatides40236LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides40237IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides40238OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides40239CARBON CATABOLITE REPRESSOR PROTEIN 4
Paelopatides40240CARBON CATABOLITE REPRESSOR PROTEIN 4
Paelopatides40241NETRIN/LAMININ-RELATED
Paelopatides40242RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides40243RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides40247TETRATRICOPEPTIDE REPEAT PROTEIN 16
Paelopatides40248-
Paelopatides40249PARAOXONASE
Paelopatides40250-
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