About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40292GLUTAMATE DEHYDROGENASE
Paelopatides40293GLUTAMATE DEHYDROGENASE
Paelopatides40294-
Paelopatides40295-
Paelopatides40296ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
Paelopatides40297-
Paelopatides40298LORICRIN
Paelopatides402993-KETO-STEROID REDUCTASE
Paelopatides40300SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides40301-
Paelopatides40302-
Paelopatides40303TRANSMEMBRANE PROTEIN 169
Paelopatides40304CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER
Paelopatides40305PROTEIN CBG26694
Paelopatides40306ADAPTIN, ALPHA/GAMMA/EPSILON
Paelopatides40307DELTA-RELATED
Paelopatides40308REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides40309SCAVENGER RECEPTOR CLASS F
Paelopatides40310DRAB11-RELATED
Paelopatides40311ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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