About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides40332-
Paelopatides40333RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides40334HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Paelopatides40335BTB POZ DOMAIN CONTAINING 7
Paelopatides40336-
Paelopatides40337PROTEIN CBG26694
Paelopatides40338-
Paelopatides40339POL PROTEIN
Paelopatides40340PARANEOPLASTIC ANTIGEN
Paelopatides40341-
Paelopatides40342UBIQUITINATION FACTOR E4
Paelopatides40343COILED-COIL DOMAIN-CONTAINING PROTEIN 30
Paelopatides40344ZINC FINGER PROTEIN
Paelopatides40345NEFA-INTERACTING NUCLEAR PROTEIN NIP30
Paelopatides40346ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40347ZINC FINGER PROTEIN
Paelopatides40348ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides40349HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides40350CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides40351CARBOHYDRATE SULFOTRANSFERASE 15
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