About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10899DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g109ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
Clavulariidae_g1090
Clavulariidae_g10900DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10901ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10902
Clavulariidae_g10903INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10904
Clavulariidae_g10905PROTEIN, PUTATIVE-RELATED
Clavulariidae_g10906
Clavulariidae_g10907
Clavulariidae_g10908ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10909EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g1091DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10910
Clavulariidae_g10911
Clavulariidae_g10912DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10913
Clavulariidae_g10914DUF3504 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10915
Clavulariidae_g10916
Clavulariidae_g10917PROTEIN CBG23764
Clavulariidae_g10918
Clavulariidae_g10919
Clavulariidae_g1092
Clavulariidae_g10920PROTEIN, PUTATIVE-RELATED
Clavulariidae_g10921REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10922THAP DOMAIN PROTEIN
Clavulariidae_g10923TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g10924
Clavulariidae_g10925PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g10926HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g10927
Clavulariidae_g10928
Clavulariidae_g10929
Clavulariidae_g1093
Clavulariidae_g10930
Clavulariidae_g10931
Clavulariidae_g10932EXPRESSED PROTEIN
Clavulariidae_g10933EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g10934
Clavulariidae_g10935
Clavulariidae_g10936
Clavulariidae_g10937CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10938
Clavulariidae_g10939
Clavulariidae_g1094
Clavulariidae_g10940
Clavulariidae_g10941
Clavulariidae_g10942
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