About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10853
Clavulariidae_g10854
Clavulariidae_g10855RETROTRANSPOSON
Clavulariidae_g10856F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10857
Clavulariidae_g10858HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g10859REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1086PROTEIN CBG23764
Clavulariidae_g10860-
Clavulariidae_g10861PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g10862
Clavulariidae_g10863
Clavulariidae_g10864
Clavulariidae_g10865
Clavulariidae_g10866REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10867
Clavulariidae_g10868
Clavulariidae_g10869PROTEIN CBG23806
Clavulariidae_g1087THAP DOMAIN PROTEIN
Clavulariidae_g10870
Clavulariidae_g10871
Clavulariidae_g10872
Clavulariidae_g10873
Clavulariidae_g10874UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g10875UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g10876
Clavulariidae_g10877TRANSPOSASE-RELATED
Clavulariidae_g10878TRANSPOSASE-RELATED
Clavulariidae_g10879FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g1088EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10880REVERSE TRANSCRIPTASES
Clavulariidae_g10881
Clavulariidae_g10882C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10883C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10884PROTEIN CBG26694
Clavulariidae_g10885
Clavulariidae_g10886
Clavulariidae_g10887HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g10888
Clavulariidae_g10889
Clavulariidae_g1089
Clavulariidae_g10890
Clavulariidae_g10891
Clavulariidae_g10892DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10893
Clavulariidae_g10894HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g10895DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10896TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g10897REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10898
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