About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41215RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1
Paelopatides41216-
Paelopatides41217ENDONUCLEASE-RELATED
Paelopatides41218HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Paelopatides41219RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides41220CENTROSOMAL PROTEIN CEP126
Paelopatides41221TUBULIN
Paelopatides41222TUBULIN
Paelopatides41223LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73
Paelopatides41224-
Paelopatides41225TRANSPOSON
Paelopatides41226ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides41227-
Paelopatides41228EG:EG0003.4 PROTEIN-RELATED
Paelopatides41229EG:EG0003.4 PROTEIN-RELATED
Paelopatides41230EG:EG0003.4 PROTEIN-RELATED
Paelopatides41231LIPID PHOSPHATE PHOSPHATASE
Paelopatides41232-
Paelopatides41233-
Paelopatides41234BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
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