About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41235-
Paelopatides41236-
Paelopatides41237-
Paelopatides41238-
Paelopatides41242REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41243WD REPEAT-CONTAINING PROTEIN 73
Paelopatides41244TSC22 DOMAIN FAMILY PROTEIN 1
Paelopatides41245TSC22
Paelopatides41246-
Paelopatides41247UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING
Paelopatides41248C13ORF1 PROTEIN-RELATED
Paelopatides41249RETROTRANSPOSON
Paelopatides41250ARMADILLO REPEAT-CONTAINING PROTEIN 3
Paelopatides41251PROTEIN CBG26694
Paelopatides41252REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41253METALLOPROTEASE INHIBITOR
Paelopatides41254METALLOPROTEASE INHIBITOR
Paelopatides41255METALLOPROTEASE INHIBITOR
Paelopatides41256SYNAPSIN
Paelopatides41257F-BOX ONLY PROTEIN 7
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