About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides41279ATAXIN 2-RELATED
Paelopatides41280ZINC PHOSPHODIESTERASE ELAC PROTEIN 2
Paelopatides41281ZINC PHOSPHODIESTERASE ELAC PROTEIN 2
Paelopatides41282SULFATE TRANSPORTER
Paelopatides41283PROTEIN CBG26694
Paelopatides41284SULFATE TRANSPORTER
Paelopatides41285PROTEIN ENHANCER OF SEVENLESS 2B
Paelopatides41286PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides41287ALPHA-TECTORIN-RELATED
Paelopatides41288FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41289-
Paelopatides41290FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41291FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides41292PEROXISOMAL MEMBRANE PROTEIN PEX13
Paelopatides41294SYNAPTOTAGMIN
Paelopatides41295ENDONUCLEASE-RELATED
Paelopatides41296REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides41297DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Paelopatides41298-
Paelopatides41299NACHT DOMAIN-CONTAINING PROTEIN
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