About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_1211-1.18
Bpl_scaf_1211-1.20
Bpl_scaf_1211-1.22
Bpl_scaf_1211-1.23NG37
Bpl_scaf_12110-0.11
Bpl_scaf_12110-0.5
Bpl_scaf_12110-0.9
Bpl_scaf_12117-0.0
Bpl_scaf_12118-0.0
Bpl_scaf_12118-1.3-
Bpl_scaf_12118-1.4
Bpl_scaf_12118-2.7JANUS-A/JANUS-B
Bpl_scaf_12118-3.9SYNAPTOTAGMIN
Bpl_scaf_12118-5.4IMMEDIATE EARLY RESPONSE GENE
Bpl_scaf_12118-5.5
Bpl_scaf_12118-5.8
Bpl_scaf_12122-0.1
Bpl_scaf_12122-0.11SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Bpl_scaf_12122-0.12TOLL-LIKE RECEPTOR
Bpl_scaf_12122-0.14TOLL-LIKE RECEPTOR
Bpl_scaf_12122-0.15TOLL-LIKE RECEPTOR
Bpl_scaf_12122-0.16ANTIGEN BSP, PUTATIVE-RELATED
Bpl_scaf_12122-0.73TOLL-LIKE RECEPTOR
Bpl_scaf_12134-0.6
Bpl_scaf_12149-0.7METHYLTRANSFERASE-LIKE PROTEIN 24
Bpl_scaf_12149-0.8ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Bpl_scaf_12149-0.9
Bpl_scaf_12157-0.9
Bpl_scaf_12167-0.6KRAB AND ZINC FINGER DOMAIN-CONTAINING
Bpl_scaf_12168-1.10DYSTROGLYCAN-RELATED
Bpl_scaf_12168-1.5ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
Bpl_scaf_12168-1.7-
Bpl_scaf_12168-2.5BONUS, ISOFORM C-RELATED
Bpl_scaf_12168-2.7PROPERDIN
Bpl_scaf_12168-3.15PHOSDUCIN-LIKE PROTEIN
Bpl_scaf_12168-3.16PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Bpl_scaf_12168-3.4TWINFILIN
Bpl_scaf_12168-4.4NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4
Bpl_scaf_12168-4.5ATP-DEPENDENT RNA HELICASE DBP3
Bpl_scaf_12168-6.21
Bpl_scaf_12168-6.23
Bpl_scaf_12168-6.24
Bpl_scaf_12168-6.26TITIN
Bpl_scaf_12168-6.28
Bpl_scaf_12170-0.1CELL FATE DETERMINING PROTEIN MAB21-RELATED
Bpl_scaf_12170-0.12
Bpl_scaf_12183-0.14MITOCHONDRIA-EATING PROTEIN-RELATED
Bpl_scaf_12183-0.17INTERFERON-INDUCED PROTEIN 44
Bpl_scaf_12183-0.18INTERFERON-INDUCED PROTEIN 44
Bpl_scaf_12183-0.24PARANEOPLASTIC ANTIGEN
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